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Chen, Rick

Publications and source records attributed to Chen, Rick.

4 records
All sourcesNASA NTRSDOE OSTI
NASA NTRS2016

GeneLab: Multi-Omics Investigation of Rodent Research-1 Bio-Banked Tissues

NASAs Rodent Research (RR) project is playing a critical role in advancing biomedical research on the physiological effects of space environments. Due to the limited resources for conducting biological experiments aboard the International Space Station (ISS), it is imperative to use crew time efficiently while maximizing high-quality science return. NASAs GeneLab project has as its primary objectives to 1) further increase the value of these experiments using a multi-omics, systems biology-based approach, and 2) disseminate these data without restrictions to the scientific community. The current investigation assessed viability of RNA, DNA, and protein extracted from archived RR-1 tissue samples for epigenomic, transcriptomic, and proteomic assays. During the first RR spaceflight experiment, a variety of tissue types were harvested from subjects, snap-frozen or RNAlater-preserved, and then stored at least a year at -80OC after return to Earth. They were then prioritized for this investigation based on likelihood of significant scientific value for spaceflight research. All tissues were made available to GeneLab through the bio-specimen sharing program managed by the Ames Life Science Data Archive and included mouse adrenal glands, quadriceps, gastrocnemius, tibialis anterior, extensor digitorum longus, soleus, eye, and kidney. We report here protocols for and results of these tissue extractions, and thus, the feasibility and value of these kinds of omics analyses. In addition to providing additional opportunities for investigation of spaceflight effects on the mouse transcriptome and proteome in new kinds of tissues, our results may also be of value to program managers for the prioritization of ISS crew time for rodent research activities. Support from the NASA Space Life and Physical Sciences Division and the International Space Station Program is gratefully acknowledged.

GeneLab↗
NASA NTRS2016

The Staring OBservations of the Atmosphere (SOBA) Mission Concept

The Staring OBservations of the Atmosphere (SOBA) Mission is a concept that was developed and matured under the guidance of the NASA Ames Project EXellence (APEX) program. If funded, it will provide an unprecedented opportunity to improve ash transport forecasts and climate model simulations associated with volcanic eruptions. NASA and National science objectives require a better understanding of volcanic aerosol and trace gas emissions, transport, chemical transformation, and deposition, since they impact Earth's climate and atmospheric composition, human health, and aviation safety. Natural hazards such as the 2010 eruption of the Eyjafjallajökull volcano in Iceland demonstrated how existing remote-sensing assets were inadequate for individual volcanic event monitoring. During this eruption, available instruments were unable to provide data necessary to initialize volcanic plume transport models so that they could accurately predict the quantity and location of volcanic ash. As a result, thousands of flights around the world were grounded unnecessarily, at great expense. Volcanoes can also play a large role in regulation of the Earth's climate, so SOBA observations will also be used to evaluate and improve volcanic aerosol and trace gas simulation in chemical transport models (CTMs) and global climate models (GCMs). We propose the development of an airborne remote sensing concept and field campaign that will respond to an eruption and provide near real time observations of a volcanic plume, specifically ash injection height, transport, aerosol microphysical physical properties, and the location and concentration of sulfur dioxide (SO2) (sulfate (SO42-) aerosol precursor). This airborne system will utilize a depolarization sensitive, downward looking Light Detection And Ranging (lidar) instrument and an ultraviolet (UV) imaging spectrometer, and will provide data to be ingested by volcanic ash advisory models. Furthermore, the lessons learned in the development of this system could eventually guide regular deployment of similar systems by NASA or other government agencies.

Aerosols↗
NASA NTRS2015

GeneLab: A Systems Biology Platform for Spaceflight Omics Data

NASA's mission includes expanding our understanding of biological systems to improve life on Earth and to enable long-duration human exploration of space. Resources to support large numbers of spaceflight investigations are limited. NASA's GeneLab project is maximizing the science output from these experiments by: (1) developing a unique public bioinformatics database that includes space bioscience relevant "omics" data (genomics, transcriptomics, proteomics, and metabolomics) and experimental metadata; (2) partnering with NASA-funded flight experiments through bio-sample sharing or sample augmentation to expedite omics data input to the GeneLab database; and (3) developing community-driven reference flight experiments. The first database, GeneLab Data System Version 1.0, went online in April 2015. V1.0 contains numerous flight datasets and has search and download capabilities. Version 2.0 will be released in 2016 and will link to analytic tools. In 2015 Genelab partnered with two Biological Research in Canisters experiments (BBRIC-19 and BRIC-20) which examine responses of Arabidopsis thaliana to spaceflight. GeneLab also partnered with Rodent Research-1 (RR1), the maiden flight to test the newly developed rodent habitat. GeneLab developed protocols for maxiumum yield of RNA, DNA and protein from precious RR-1 tissues harvested and preserved during the SpaceX-4 mission, as well as from tissues from mice that were frozen intact during spaceflight and later dissected. GeneLab is establishing partnerships with at least three planned flights for 2016. Organism-specific nationwide Science Definition Teams (SDTs) will define future GeneLab dedicated missions and ensure the broader scientific impact of the GeneLab missions. GeneLab ensures prompt release and open access to all high-throughput omics data from spaceflight and ground-based simulations of microgravity and radiation. Overall, GeneLab will facilitate the generation and query of parallel multi-omics data, and deep curation of metadata for integrative analysis, allowing researchers to uncover cellular networks as observed in systems biology platforms. Consequently, the scientific community will have access to a more complete picture of functional and regulatory networks responsive to the spaceflight environment.. Analysis of GeneLab data will contribute fundamental knowledge of how the space environment affects biological systems, and enable emerging terrestrial benefits resulting from mitigation strategies to prevent effects observed during exposure to space. As a result, open access to the data will foster new hypothesis-driven research for future spaceflight studies spanning basic science to translational science.

proteomics↗