Modernizing Open-TGGATEs Through Data and AI Methods
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Cong, Guojing [ORNL]↗
Engineering topics
Auerbach, Scott [NIH]
Publications and source records attributed to Auerbach, Scott [NIH].
TransTissueFormer : Translating Transcriptomic Profiles Between Tissues
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Cong, Guojing [ORNL]↗
A Study on Contrastive Graph Neural Network Pretraining for Predicting Transcriptome Profiles
We study graph neural network learning for transcriptomics with limited amount of labeled data. Our study reveals that simple GNN architectures perform well and do not suffer from over-fitting as the more sophisticated ones. Our study shows that although contrastive learning as a pretraining strategy has been successful in predicting properties such as formation and binding energy, it is not effective for transcriptomics.
Ma, Jiaji [University of Virginia]↗